Flexible cloglog links for binomial regression models as an alternative for imbalanced medical data

The complementary log-log link was originally introduced in 1922 to R. A. Fisher, long before the logit and probit links. While the last two links are symmetric, the complementary log-log link is an asymmetrical link without a parameter associated with it. Several asymmetrical links with an extra parameter were proposed in the literature over last few years to deal with imbalanced data in binomial regression (when one of the classes is much smaller than the other); however, these do not necessarily have the cloglog link as a special case, with the exception of the link based on the generalized extreme value distribution. In this paper, we introduce flexible cloglog links for modeling binomial regression models that include an extra parameter associated with the link that explains some unbalancing for binomial outcomes. For all cases, the cloglog is a special case or the reciprocal version loglog link is obtained. A Bayesian Markov chain Monte Carlo inference approach is developed. Simulations study to evaluate the performance of the proposed algorithm is conducted and prior sensitivity analysis for the extra parameter shows that a uniform prior is the most convenient for all models. Additionally, two applications in medical data (age at menarche and pulmonary infection) illustrate the advantages of the proposed models.     

Biotic factors determine ecosystem processes in environments with different hydrological regimes

1. The interest in understanding ecosystem functioning has grown in recent years due to the effects of species loss on ecosystem processes. Even though biotic and abiotic factors control ecosystem processes, their relative influence may vary according to ecosystem dynamics. In flood and coastal plains, these dynamics are mainly represented by flood pulses and hydroregime, respectively. The objective of this study was to investigate the importance of abiotic and biotic factors for the ecosystem processes represented by zooplankton secondary production (SP), biomass (ZB), and resource use efficiency (RUE) in lentic waterbodies subjected to different hydrological regimes. We hypothesised that abiotic factors would more strongly determine the ecosystem processes in temporary waterbodies and floodplain lakes, given their greater susceptibility to environmental changes. Biotic factors would be more relevant in coastal lagoons due to their greater temporal stability.
2. Sampling was undertaken quarterly over 1 year in eight coastal lagoons, 10 temporary ponds and five floodplain lakes. The environments were characterised in relation to limnological variables, and zooplankton functional divergence, functional dispersion (FDis), functional evenness, functional richness, and taxonomic richness were measured. Analysis of variance (ANOVA) was used to verify seasonal changes in SP, ZB, RUE, functional diversity, richness, and abiotic factors. Linear mixed models were used to determine which abiotic and biotic factors were the most important for ZB, SP, and RUE.
3. In the coastal lagoons, RUE differed over time. In the temporary ponds and floodplain lakes, no seasonal significant differences were observed for any of the zooplankton production variables. The linear mixed model analyses showed that models composed mainly of biotic factors were better fitted to the production variables. For coastal lagoons, phytoplankton density affected ZB, SP, and RUE increasing them by 9.9 mg DW/m³, 12.4 mg DW/m³, and 1.23, respectively. For temporary ponds, FDis lowered ZB by 6.9 mg DW/m³ and taxonomic richness increased SP and RUE by 14.2 mg DW/m³ and 1.17, respectively. For floodplain lakes, FDis lowered ZB it by 9.9 mg DW/m³ and functional divergence lowered RUE by 0.81.
4. The present study demonstrates that biotic factors are the main determinants of ecosystem processes in neotropical lentic waterbodies, irrespective of their annual hydrological regimes. Complementarity effects and high functional diversity are more important in more stable environments, whereas redundancy and low functional diversity prevail in environments subject to more frequent environmental changes. Biotic factors play a major role in ensuring the functioning of aquatic ecosystems and indicate the important role of biodiversity in enabling ecosystem states to be maintained after disturbances and to prevent changes in ecosystem processes.

     

Obesity in Children: Recent Advances in Energy Metabolism and Body Composition

In this paper we review recent advances in energy metabolism and body composition studies in pre-pubescent children and the relationship to childhood obesity. Our review on energy expenditure focusses on studies of total energy expenditure using doubly labeled water, the role of energy expenditure in the development of obesity, and the determinants of resting energy expenditure in children. The relatively few studies that have examined the regulation of energy and macronutrient intake in children are also reviewed. In terms of body composition, we focus on recent methodological studies that have developed existing techniques for application to the pediatric population, including dual energy X-ray absorptiometry and bioelectrical resistance. Lastly, we review existing information relating to measurement and alteration of body fat distribution in children.     

Diversity in the genus Rhabdias (Nematoda,Rhabdiasidae): Evidence for cryptic speciation

Lungworms from the genus Rhabdias are common parasites of amphibians and reptiles distributed worldwide. To assess the diversity of Rhabdias spp., we performed molecular analyses of 35 specimens sampled in different regions of Brazil. Molecular analyses were based on the internal transcribed spacer (ITS), large subunit (28S) ribosomal and the cytochrome oxidase I (COI) mitochondrial genes. DNA sequence divergence was compared among ribosomal and mitochondrial genes, analyses using the general mixed Yule‐coalescent (GMYC) method based on the COI gene were used to identify possible cryptic diversity, and phylogenetic analyses using concatenated ITS and 28S ribosomal genes were used to test the monophyly of Rhabdiasidae. We revealed five morphospecies: R. cf. stenocephala, R. breviensis, R. pseudosphaerocephala and two new species, Rhabdias sp.4 and Rhabdias sp.5. DNA sequence levels of divergence among genes ITS, 28S and COI were compared, and the efficiency of the molecular markers to identify species (ITS and COI) and lineages (COI) was tested. GMYC was assigned to 17 well‐supported clades (i.e., 17 species), and cryptic diversity was detected in the Neotropical region as evidenced by the multiple lineages in R. breviensis and R. pseudosphaerocephala. In addition, our results suggest evidence for host–parasite cophylogeny in the R. pseudosphaerocephala complex and dispersal events among their populations. Phylogenetic analyses supported the monophyly of Rhabdiasidae and improved the resolution of main clades. Rhabdias breviensis is closely related to Rhabdias cf. africanus, Rhabdias cf. stenocephala, R. pseudosphaerocephala, Rhabdias sp.4 and Rhabdias sp.5 grouping together in a main clade with Neotropical‐related species. The large geographical distribution appeared to be a phylogenetic pattern among the species of Rhabdias from the neotropics.     

Feasibility of a Clinic-Based Hypocaloric Dietary Intervention Implemented in a School Setting for Obese Children

At 6 months the 12 superobese children on protein-sparing modified fast diet had a significant weight loss from baseline (-5.6 ± 7.1 kg, ANOVA p < 0.02); a significant decrease in percentage IBW (-24.3 ± 20%, ANOVA p < 0.002); and had positive growth velocity Z-score (1.3 ± 1.6, ANOVA p < 0.05). Six children were not superobese at 6 months. At 6 months eight of 12 children were active participants and 11 of 12 children were followed. Decrease in blood pressure, as well as, downward trends in serum lipids were observed at 6 months. No clinical complications were observed. At 6 months, the 7 control superobese children, when compared with baseline had gained weight (2.8 ± 3.1 kg, ANOVA p < 0.008); but had no significant change in percentage IBW (-0.3 ± 5.9%, ANOVA p = 0.61); and had no changes in growth velocity Z-score (0.1 ± 1.3, ANOVA p = 0.83). These children did not have any change in blood pressure and an upward trend in serum lipids were observed at 6 months. Protein-sparing modified fast diet and a hypocaloric balanced diet appear to be effective in a group of superobese-school-age children in a medically supervised clinic-based program implemented in a school setting over a 6-month period. The efforts of committed clinic staffs, school officials, peers, and family involvement were crucial to the success of this intervention program in promoting and maintaining weight loss over a 6-month period. Further research with a specific comparison of the hypocaloric diets with longer follow-up periods in the school setting is necessary. In the meantime, these diets should be used only with close medical supervision.     

Toxic Effect of Cysteine Against Salmonella typhimurium

Cysteine was shown to be toxic to Salmonella typhimurium. The mechanism of this toxicity may be due, at least in part, to cysteine's ability to cause deoxyribonucleic acid strand scissions.     

Unique corneal tomography features of allergic eye disease identified by OCT imaging and artificial intelligence

The purpose of this study was to assess unique corneal tomographic parameters of allergic eye disease (AED) using optical coherence tomography (OCT) and artificial intelligence (AI). A total of 57 eyes diagnosed with AED were included. The curvature and aberrations of the air‐epithelium (A‐E) and epithelium‐Bowman's layer (E‐B) interfaces were calculated. Random forest AI models were built combing this data with the parameters of healthy, forme fruste keratoconus (FFKC) and KC eyes. The AI models were cross‐validated with 3‐fold random sampling. Each model was limited to 10 trees. The AI model incorporating both A‐E and E‐B parameters provided the best classification of AED eyes (area under the curve = 0.958, sensitivity = 80.7%, specificity = 98.5%, precision = 88.2%). Further, the E‐B interface parameters provided the highest information gain in the AI model. A few AED eyes (n = 9) had tomography parameters similar to FFKC and KC eyes and may be at risk of progression to KC.     

Factors Influencing Algae–Clay Aggregation

The dumping of bauxite tailings on a clear-water Amazonian lake caused a significant decrease in phytoplankton densities. The influence of these suspended clay particles on algal sinking, through algae–clay aggregation, was investigated under laboratory conditions, by measuring fluctuations in algal population densities over time, with different suspended clay concentrations. The population densities of the four algal species tested, Phormidium amoenum, Mougeotia sp., Staurodesmus convergens and Chlorella sp., were decreased by the algae–clay aggregation. The extent of this process was dependent on algal morphological characteristics such as size and shape, as well as on the concentration of suspended clay particles.     

Metaciclogénesis de Trypanosoma cruzi en Belminus ferroae (Reduviidae: Triatominae) y capacidad infectiva de las heces en condiciones de laboratorio

IntroducciónBelminus ferroae es un triatomino de comportamiento entomófago, sin embargo, puede alimentarse de vertebrados ocasionalmente. No se ha demostrado infección natural por Trypanosoma cruzi en esta especie, como tampoco la metaciclogénesis del parásito.ObjetivoExaminar la metaciclogénesis de T. cruzi en B. ferroae y la capacidad infectiva de las heces o sus contenidos intestinales en roedores.Materiales y métodosSe analizaron las heces y la orina expulsadas espontáneamente por los insectos o mediante compresión abdominal o extracción del contenido intestinal a los 10, 20, 30, 40, 50 y 60 días. Se cuantificó la carga parasitaria de T. cruzi y sus formas evolutivas se identificaron con tinción de Giemsa. Asimismo, se evaluó en ratones albinos la capacidad infectiva de los tripomastigotes metacíclicos de T. cruzi obtenidos de las heces o contenidos intestinales de los especímenes infectados.ResultadosEl análisis parasitológico reveló tres (15%) insectos infectados con T. cruzi a los 30 (n=1), 40 (n=1) y 50 (n=1) días después de la infección con cargas parasitarias de hasta 1,62 x 10⁵ tripanosomas/mm³ y porcentajes de metaciclogénesis entre el 3,5 y el 6,78%.ConclusionesSe demuestra por primera vez, en una especie del género Belminus. la metaciclogenésis de T. cruzi en condiciones de laboratorio y la capacidad infectiva de las heces para un huésped vertebrado.Palabras clave: Trypanosoma cruzi, Triatominae, enfermedad de Chagas, tripanosomiasis